PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.183410.3
Common NameCsa_5G077780, LOC101204612
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 676aa    MW: 75050.4 Da    PI: 6.3484
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.183410.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.6e-22128228198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  Cucsa.183410.3 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 218
                     99****************************964333..4459************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  Cucsa.183410.3 219 NGELRVGVRR 228
                     999*****97 PP

2Auxin_resp942.5e-31254333183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F+v+Y+Pr   s F v+++k+++a ++k+svGmRfkm+fe+e+++er++sGt+vg+ d  +  W nS+WrsLk
  Cucsa.183410.3 254 ASHAISTGTLFSVFYKPR---STFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLK 333
                     789***************...79**********************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-43117257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-40124243IPR015300DNA-binding pseudobarrel domain
CDDcd100176.97E-21126228No hitNo description
PfamPF023622.8E-20128228IPR003340B3 DNA binding domain
SMARTSM010192.0E-21128230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.265128230IPR003340B3 DNA binding domain
PfamPF065071.3E-29254333IPR010525Auxin response factor
PROSITE profilePS5174529.276550643IPR000270PB1 domain
PfamPF023096.5E-6551586IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-12552627No hitNo description
PfamPF023091.1E-6597640IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MSFSAASNLP SGGPHSGLSS DALYRELWHA CAGPLVTLPR QDERVYYFPQ GHMEQLEASM  60
HQGLEQQMPS FNLPSKILCK VVNVVLRAES DTDEVYAQIT LLPESNQNEV TSPDPPLPEP  120
TRCNVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA TDLHGNQWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV  240
ISSHSMHLGV LATASHAIST GTLFSVFYKP RSTFLVSLNK YLEAQNHKLS VGMRFKMRFE  300
GEEVPERSFS GTIVGLGDNA SPGWANSEWR SLKVQWDEPS SILRPDKVSA WELEPLVASN  360
PLSTQPTQRN KRPRPTVLPS SSPDATVLGG WKPTVESSTF SYAEPQRGRD LYSSPKFSTA  420
ASNSLGFNAN SSLGAVSSNN YWCNTNRVEN IMDPSSHGAN REPVEKKQNS RNGCRLFGIQ  480
LLGNSNVDEA SPVSTPKMGG EDRLVPPIDT DFEQHSEPSN IHRSDIPSIS CDADKSCLIS  540
PLESQSRQIR SCTKVHMQGI AVGRAVDLTR FNQYDDLLRK LEEMFDIEGE LCGSLKKWQV  600
VYTDDEDDMM LVGDDPWNEF CSMVRKIFIY TTEEVKRLSP KIKLPLGGEA KLSKPDSDII  660
ANHTEDQSSI VGSDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldw_B0.053562355Auxin response factor 1
4ldw_A0.053562355Auxin response factor 1
4ldv_A0.053562355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370374KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3234140.0KU323414.1 UNVERIFIED: Trichosanthes dioica clone TdARF_12 auxin response factor 1-like mRNA, partial sequence.
GenBankKU3234270.0KU323427.1 UNVERIFIED: Trichosanthes dioica clone TdARF_35 auxin response factor 1-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654515.10.0PREDICTED: auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A0A0KJ000.0A0A0A0KJ00_CUCSA; Auxin response factor
STRINGVIT_12s0035g01800.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]